linersoc.blogg.se - Online sequence analysis

ONLINE SEQUENCE ANALYSIS REGISTRATION
ONLINE SEQUENCE ANALYSIS WINDOWS

Genome Data Viewer (GDV)Ī genome browser for interactive navigation of eukaryotic RefSeq genome assemblies with comprehensive inspection of gene, expression, variation and other annotations. This tool compares nucleotide or protein sequences to genomic sequence databases and calculates the statistical significance of matches using the Basic Local Alignment Search Tool (BLAST) algorithm. Tool for aligning a query sequence (nucleotide or protein) to GenBank sequences included on microarray or SAGE platforms in the GEO database. CD-Search uses RPS-BLAST (Reverse Position-Specific BLAST) to compare a query sequence against position-specific score matrices that have been prepared from conserved domain alignments present in the Conserved Domain Database (CDD). Identifies the conserved domains present in a protein sequence. Conserved Domain Search Service (CD Search) CGVĬompare genomes based on assembly-assembly alignments COBALTĬOBALT is a protein multiple sequence alignment tool that finds a collection of pairwise constraints derived from conserved domain database, protein motif database, and sequence similarity, using RPS-BLAST, BLASTP, and PHI-BLAST. BLAST can be used to infer functional and evolutionary relationships between sequences as well as to help identify members of gene families. The program compares nucleotide or protein sequences to sequence databases and calculates the statistical significance of matches.

Basic Local Alignment Search Tool (BLAST)įinds regions of local similarity between biological sequences. The default display provides ready navigation to review alignments in the Graphics display. Performs a BLAST search of the genomic sequences in the RefSeqGene/LRG set. If you need to assemble multiple overlapping sequence reads, please see ChromasPro.Performs a BLAST search for similar sequences from selected complete eukaryotic and prokaryotic genomes. An introductory discount is available by following the link under the Options menu in Chromas.

ONLINE SEQUENCE ANALYSIS REGISTRATION

The PeakTrace RP component requires registration for a free account, and is a paid service after the 40 free units have been used. Version history.Ĭhromas is free of charge.

ONLINE SEQUENCE ANALYSIS WINDOWS

ab1 files using the PeakTrace RP component from Nucleics Pty Ltd to improve peak readability and extract more high-quality bases.Ĭompatible with Windows XP, Vista, 7, 8, 10, 11.

Batch processing, including format conversion, sequence export with vector removal, batch printing and batch export of raw data.

Copy an image of a chromatogram section for pasting into documents or presentations.

Display translations in 3 frames along with the sequence.

Search for subsequences by exact matching or optimal alignment.

Reverse & complement the sequence and chromatogram.

Copy the sequence to the clipboard in plain text, FASTA or FASTQ format for pasting into other applications.

Export sequences in plain text, FASTA, FASTQ, EMBL, GenBank or GCG formats, or formatted with base numbering for presentation.

Automatic removal of low-quality sequence (when quality data is available) or vector sequences.

Print a chromatogram with options to zoom or fit to one page.

Opens SCF and ZTR format chromatogram files created by other sequencers or retrieved from databases.

ab1 chromatogram files from Applied Biosystems DNA sequencers. Chromas is a free trace viewer for simple DNA sequencing projects which do not require assembly of multiple sequences.